Data Loading Repositories
data_cord19
A collection of COVID-19 related scientific papers with metadata like authors, affiliations, references transformed from the COVID-19 Open Research Dataset Challenge
graph LR
Repo{{data_cord19}}-->|"loads"|Node1((Paper))
Repo-->|"maintained by"|Maintainer([Tim Bleimehl])
Node1-->Node2(("BodyText"))
Node1-->Node3(("Abstract"))
Node1-->Node4(("Author"))
subgraph "primary nodes"
Node1
Node2
Node3
Node4
end
click Maintainer href "https://github.com/motey" "GitHub Maintainer Profile" _blank
click Repo href "https://github.com/covidgraph/data_cord19" "GitHub Repo" _blank
click Node1 href "/docs/api/objects/paper"
click Node2 href "/docs/api/objects/body-text"
click Node3 href "/docs/api/objects/abstract"
click Node4 href "/docs/api/objects/author"
data_biobase
The base biomedical concepts from Gtex, GeneOntology, Reactome, NcbiTaxonomy, NcbiGene, BigWordList, Ensembl, Refseq, Uniprot
graph LR
Repo{{data_biobase}}-->|"loads"|Node1((Gene))
Repo-->|"maintained by"|Maintainer([Martin Preusse])
Node1-->Node2(("Transcripts"))
Node1-->Node3(("Proteins"))
subgraph "primary nodes"
Node1
Node2
Node3
end
click Maintainer href "https://github.com/mpreusse" "GitHub Maintainer Profile" _blank
click Repo href "https://github.com/covidgraph/data_biobase" "GitHub Repo" _blank
click Node1 href "/docs/api/objects/gene"
click Node2 href "/docs/api/objects/transcript"
click Node3 href "/docs/api/objects/protein"
data_jhu_population
Covid case statistics from Jonhs Hopkins University and UN World Population data
graph LR
Repo{{data_jhu_population}}-->|"loads"|Node1((DailyReport))
Repo-->|"maintained by"|Maintainer1([Martin Preusse])
Repo-->|"maintained by"|Maintainer2([Tim Bleimehl])
Node1-->Node2(("Province"))
Node1-->Node3(("Country"))
subgraph "primary nodes"
Node1
Node2
Node3
end
click Maintainer1 href "https://github.com/mpreusse" "GitHub Maintainer Profile" _blank
click Maintainer href "https://github.com/motey" "GitHub Maintainer Profile" _blank
click Repo href "https://github.com/covidgraph/data_jhu_population" "GitHub Repo" _blank
data-lens-org-covid19-patents
Data transformed from the Lens.org Covid19 Patent Dataset
graph LR
Repo{{data-lens-org-covid19-patents}}-->|"loads"|Node1((Patent))
Repo-->|"maintained by"|Maintainer([Tim Bleimehl])
Node1-->Node2(("PatentTitle"))
Node1-->Node3(("PatentAbstract"))
subgraph "primary nodes"
Node1
Node2
Node3
end
click Maintainer href "https://github.com/motey" "GitHub Maintainer Profile" _blank
click Repo href "https://github.com/covidgraph/data-lens-org-covid19-patents" "GitHub Repo" _blank
click Node1 href "/docs/api/objects/patent"
click Node2 href "/docs/api/objects/patent-title"
click Node3 href "/docs/api/objects/patent-abstract"
Clinical Trials
Data transformed from ClinicalTrials.gov. For additional information see this related blog post by Kirsten Langendorf
graph LR
Repo{{data_clinical-trials-gov}}-->|"loads"|Node1((ClinicalTrial))
Repo-->|"maintained by"|Maintainer([KirstenLangendorf])
Node1-->Node2(("StudyType"))
Node1-->Node3(("Inclusion <br/>Criteria"))
Node1-->Node4(("Exclusion <br/>Criteria"))
subgraph "primary nodes"
Node1
Node2
Node3
Node4
end
click Maintainer href "https://github.com/KirstenLangendorf" "GitHub Maintainer Profile" _blank
click Repo href "https://github.com/covidgraph/data-lens-org-covid19-patents" "GitHub Repo" _blank
click Node1 href "/docs/api/objects/clinical-trial"
click Node2 href "/docs/api/objects/study-type"
click Node3 href "/docs/api/objects/inclusion-criteria"
click Node4 href "/docs/api/objects/exclusion-criteria"